“We can actually interpret where Hermes thinks the binding pocket is... it was looking at short sequences away from the functional part”
IQ
Ian Quigley Leash Bio
Latent Space: The AI Engineer Podcast ·
Ian Quigley, Leash Bio · Latent Space: The AI Engineer Podcast · Lab-in-the-Loop at Compute Speed - Ian Quigley, Leash Bio
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used Hermes attention maps to spot when the model was memorizing short amino-acid nicknames, then added targeted pocket mutations to force the model to attend to the functional region
“We can actually interpret where Hermes thinks the binding pocket is... it was looking at short sequences away from the functional part”
“We buy a known binder, run the screen again… all the chemicals that normally go in the pocket will be displaced… then we mutate the pocket and see those series drop out.”
“We use a head coach model… regional vice presidents work with head coaches, branch coaches work with physician coaches.”
“When we have an open model there, and people can test it out first, combine them to do application good for their targeted business, and later they can build their own model.”
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